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Omer S. Alkhnbashi

Informatiker

Name	Omer S. Alkhnbashi
Place	Freiburg im Breisgau (Wirkungsort) Deutschland
Academic degree	Dr. rer. nat.
Profession	Informatiker (characteristic profession)
Variant	Omer Salem Alkhnbashi Omer Salem Al-Khadher Alkhnbashi
Related	Bioinformatik (Thema)
Further information	Diss., 2017, Universität Freiburg, Technische Fakultät
Record type	Person
GND-Identifier	113079394X
Record ID	113079394X
Involved in show all Deepdefense: annotation of immune systems in prokaryotes using deep learning Interrogating two extensively self-targeting Type I CRISPR-Cas systems in Xanthomonas albilineans reveals distinct anti-CRISPR proteins that block DNA degradation SpacerPlacer: ancestral reconstruction of CRISPR arrays reveals the evolutionary dynamics of spacer deletions Revealing the small proteome of Haloferax volcaniiby combining ribosome profiling and small-protein optimized mass spectrometry CRISPRtracrRNA: robust approach for CRISPR tracrRNA detection RiboReport - benchmarking tools for ribosome profiling-based identification of open reading frames in bacteria Casboundary: automated definition of integral Cas cassettes CdrS is a global transcriptional regulator influencing cell division in Haloferax volcanii CRISPRidentify: identification of CRISPR arrays using machine learning approach CRISPRloci: comprehensive and accurate annotation of CRISPR–Cas systems CRISPRcasIdentifier: Machine learning for accurate identification and classification of CRISPR-Cas systems Comprehensive search for accessory proteins encoded with archaeal and bacterial type III CRISPR-cas gene cassettes reveals 39 new cas gene families Freiburg RNA tools: a central online resource for RNA-focused research and teaching The nuts and bolts of the Haloferax CRISPR-Cas system I-B Computational characterisation of genomic CRISPR-Cas systems in archaea and bacteria Structural constraints and enzymatic promiscuity in the Cas6-dependent generation of crRNAs CRISPRstrand: predicting repeat orientations to determine the crRNA-encoding strand at CRISPR loci CRISPRmap: an automated classification of repeat conservation in prokaryotic adaptive immune systems

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Omer S. Alkhnbashi

Deepdefense: annotation of immune systems in prokaryotes using deep learning

Interrogating two extensively self-targeting Type I CRISPR-Cas systems in Xanthomonas albilineans reveals distinct anti-CRISPR proteins that block DNA degradation

SpacerPlacer: ancestral reconstruction of CRISPR arrays reveals the evolutionary dynamics of spacer deletions

Revealing the small proteome of Haloferax volcaniiby combining ribosome profiling and small-protein optimized mass spectrometry

CRISPRtracrRNA: robust approach for CRISPR tracrRNA detection

RiboReport - benchmarking tools for ribosome profiling-based identification of open reading frames in bacteria

Casboundary: automated definition of integral Cas cassettes

CdrS is a global transcriptional regulator influencing cell division in Haloferax volcanii

CRISPRidentify: identification of CRISPR arrays using machine learning approach

CRISPRloci: comprehensive and accurate annotation of CRISPR–Cas systems

CRISPRcasIdentifier: Machine learning for accurate identification and classification of CRISPR-Cas systems

Comprehensive search for accessory proteins encoded with archaeal and bacterial type III CRISPR-cas gene cassettes reveals 39 new cas gene families

Freiburg RNA tools: a central online resource for RNA-focused research and teaching

The nuts and bolts of the Haloferax CRISPR-Cas system I-B

Computational characterisation of genomic CRISPR-Cas systems in archaea and bacteria

Structural constraints and enzymatic promiscuity in the Cas6-dependent generation of crRNAs

CRISPRstrand: predicting repeat orientations to determine the crRNA-encoding strand at CRISPR loci

CRISPRmap: an automated classification of repeat conservation in prokaryotic adaptive immune systems